WASP2
Fast, indel-aware allelic-imbalance pipeline for ATAC-seq & RNA-seq. First author; Rust (PyO3) core delivers ~5× faster mapping and up to 61× faster counting vs WASP1, byte-for-byte concordant with GATK.
RustPythonNextflowPyO3
Projects
Open-source genomics tools and agentic-AI platforms I build and maintain.
Open-Source Genomics Tools
GenVarLoader
High-throughput PyTorch dataloader that builds personalized haplotype genomes on the fly, enabling variant-aware training and evaluation of genomic deep-learning models.
PythonPyTorchRust
Agentic AI Platforms
biocontext7
Open-source (MIT) Model Context Protocol platform serving 2,000+ verified bioinformatics tool bundles across 20 research domains to AI coding agents.
PythonMCPClaude Agent SDK
Hordago Labs
Evidence-first agentic-AI infrastructure for life sciences: 28 domain operating systems, 185+ agents, 1,000+ skills, and 10 MCP servers on the Claude Agent SDK, with human-in-the-loop review.
PythonClaude Agent SDKMCPNeo4j